Package index • alevinQC

Overview
`alevinQC` `alevinQC-package`	alevinQC
Functions for reading alevin/alevin-fry output data
`checkAlevinInputFiles()`	Check that all required input files are available
`checkAlevinFryInputFiles()`	Check that all required input files are available for alevin-fry
`readAlevinQC()`	Read alevin data required to generate summary report
`readAlevinFryQC()`	Read alevin-fry data required to generate summary report
Functions for generating QC reports
`alevinQCReport()` `simpleafQCReport()` `alevinFryQCReport()`	Generate alevin/alevin-fry summary report
`alevinQCShiny()` `alevinFryQCShiny()` `simpleafQCShiny()`	Generate alevin/alevin-fry summary shiny app
Plot functions
`plotAlevinKneeRaw()`	Knee plot of raw cell barcode frequencies
`plotAlevinBarcodeCollapse()`	Summary plot of cell barcode collapsing
`plotAlevinQuant()`	Panel of plots with quantification summary statistics
`plotAlevinQuantPairs()`	Pairs plot with quantification summary statistics
`plotAlevinKneeNbrGenes()`	Knee plot of the number of detected genes per cell
`plotAlevinHistogram()`	Histogram of selected summary statistic

Reference