Histogram of selected summary statistic

plotAlevinHistogram(
  cbTable,
  plotVar = "dedupRate",
  axisLabel = plotVar,
  colName = "inFinalWhiteList",
  cbName = "final whitelist",
  firstSelColName = "inFirstWhiteList"
)

Arguments

cbTable: data.frame (such as the cbTable returned by readAlevinQC or readAlevinFryQC) containing the desired summary statistic in a column.
plotVar: Character scalar giving the name of a numeric column of cbTable to plot.
axisLabel: Character scalar giving the label of the selected statistic (will be displayed as the axis label in the plot).
colName: Character scalar giving the name of a logical column of cbTable to use for filling the bars in the histogram.
cbName: Character scalar giving the name of the set of barcodes defined by colName, used for labelling the plot legend.
firstSelColName: Character scalar indicating the name of the logical column in cbTable that corresponds to the original selection of barcodes for quantification.

Value

A ggplot object

Author

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinHistogram(alevin$cbTable, plotVar = "dedupRate",
                    axisLabel = "Deduplication rate",
                    colName = "inFinalWhiteList",
                    cbName = "final whitelist")