Summary plot of cell barcode collapsing

Plot the original frequency of each cell barcode in the original whitelist against the frequency after collapsing similar cell barcodes.

plotAlevinBarcodeCollapse(
  cbTable,
  firstSelColName = "inFirstWhiteList",
  countCol = "collapsedFreq"
)

Arguments

cbTable

data.frame (such as the cbTable returned by readAlevinQC or readAlevinFryQC) with barcode frequencies before and after collapsing.

firstSelColName

Character scalar indicating the name of the logical column in cbTable that corresponds to the original selection of barcodes for quantification.

countCol

Character scalar indicating the name of the column in cbTable that corresponds to the collapsed barcode frequencies.

Value

A ggplot object

Author

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinBarcodeCollapse(alevin$cbTable)