Panel of plots with quantification summary statistics

Source: R/plotAlevinQuant.R

Panel of plots with quantification summary statistics

plotAlevinQuant(
  cbTable,
  colName = "inFinalWhiteList",
  cbName = "final whitelist",
  firstSelColName = "inFirstWhiteList"
)

Arguments

cbTable

data.frame (such as the cbTable returned by readAlevinQC or readAlevinFryQC) with collapsed barcode frequencies, the total UMI count and the number of detected genes for each cell.

colName

Character scalar giving the name of a logical column of cbTable to use for coloring the points.

cbName

Character scalar giving the name of the set of barcodes defined by colName, used for labelling the plot legend.

firstSelColName

Character scalar indicating the name of the logical column in cbTable that indicates the original selection of barcodes for quantification.

Value

A ggplot object

Author

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinQuant(alevin$cbTable, colName = "inFinalWhiteList",
                cbName = "final whitelist")