Knee plot of the number of detected genes per cell — plotAlevinKneeNbrGenes • alevinQC

Plot the number of detected genes per cell in decreasing order. Only cells contained in the original whitelist are considered.

plotAlevinKneeNbrGenes(cbTable, firstSelColName = "inFirstWhiteList")

Arguments

cbTable: data.frame (such as the cbTable returned by readAlevinQC or readAlevinFryQC) with the number of detected genes per cell.
firstSelColName: Character scalar indicating the name of the logical column in cbTable that corresponds to the original selection of barcodes for quantification.

Value

A ggplot object

Author

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinKneeNbrGenes(alevin$cbTable)