Pairs plot with quantification summary statistics

plotAlevinQuantPairs(
  cbTable,
  colName = "inFinalWhiteList",
  firstSelColName = "inFirstWhiteList"
)

Arguments

cbTable: data.frame (such as the cbTable returned by readAlevinQC or readAlevinFryQC) with collapsed barcode frequencies, the total UMI count and the number of detected genes for each cell.
colName: Character scalar giving the name of a logical column of cbTable to use for coloring the points.
firstSelColName: Character scalar indicating the name of the logical column in cbTable that corresponds to the original selection of barcodes for quantification.

Value

A ggmatrix object

Author

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinQuantPairs(alevin$cbTable, colName = "inFinalWhiteList")