Show method for compData object.
# S4 method for class 'compData'
show(object)mydata <- generateSyntheticData(dataset = "mydata", n.vars = 12500,
samples.per.cond = 5, n.diffexp = 1250)
mydata
#> An object of class compData
#> Dataset name: mydata
#> Number of samples: 10
#> Number of variables: 12496
#> Number of random outliers: 0
#> Number of single outliers: 0
#> Number of known truly differentially expressed genes: 1249
#> No differential expression analysis has been performed.
#>
#> count.matrix:
#> sample1 sample2 sample3 sample4 sample5 sample6
#> g1 193 133 647 155 554 984
#> g2 12 23 13 2 23 105
#> g3 9 4 5 9 5 6
#> g4 92 26 382 303 90 679
#> g5 6 0 1 2 4 1
#> g6 64 1 74 1 4 0
#> + 12490 rows and 4 cols...
#>
#> sample.annotations:
#> condition depth.factor
#> sample1 1 1.1056572
#> sample2 1 0.7308826
#> sample3 1 0.9092396
#> sample4 1 0.7554423
#> sample5 1 0.7896034
#> sample6 2 1.2143119
#> + 4 rows...
#>
#> variable.annotations:
#> truedispersions.S1 truedispersions.S2 truemeans.S1 truemeans.S2
#> g1 0.1014581 0.1014581 140.292683 423.447594
#> g2 0.3543401 0.3543401 8.463415 20.212813
#> g3 0.2651239 0.2651239 2.719298 4.264236
#> g4 0.3812041 0.3812041 86.463415 214.521705
#> g5 0.5372781 0.5372781 1.403509 3.001202
#> g6 5.1236532 5.1236532 10.780488 38.812221
#> n.random.outliers.up.S1 n.random.outliers.up.S2 n.random.outliers.down.S1
#> g1 0 0 0
#> g2 0 0 0
#> g3 0 0 0
#> g4 0 0 0
#> g5 0 0 0
#> g6 0 0 0
#> n.random.outliers.down.S2 n.single.outliers.up.S1 n.single.outliers.up.S2
#> g1 0 0 0
#> g2 0 0 0
#> g3 0 0 0
#> g4 0 0 0
#> g5 0 0 0
#> g6 0 0 0
#> n.single.outliers.down.S1 n.single.outliers.down.S2 M.value A.value
#> g1 0 0 1.6580385 8.973865
#> g2 0 0 2.1235724 4.694314
#> g3 0 0 0.2719910 2.919482
#> g4 0 0 1.8926089 7.929666
#> g5 0 0 0.9512174 1.697618
#> g6 0 0 -3.2563263 1.552444
#> truelog2foldchanges upregulation downregulation differential.expression
#> g1 1.5937437 1 0 1
#> g2 1.2559583 1 0 1
#> g3 0.6490528 1 0 1
#> g4 1.3109619 1 0 1
#> g5 1.0965022 1 0 1
#> g6 1.8480885 1 0 1
#> + 12490 rows...
#>