Convert a list with data and results to a compData object

Given a list with data and results (resulting e.g. from compcodeR version 0.1.0), convert it to a compData object.

convertListTocompData(inp.list)

Arguments

inp.list

A list with data and results, e.g. generated by compcodeR version 0.1.0.

Author

Charlotte Soneson

Examples

convertListTocompData(list(count.matrix = matrix(round(1000*runif(4000)), 1000),
                           sample.annotations = data.frame(condition = c(1,1,2,2)),
                           info.parameters = list(dataset = "mydata", 
                           uID = "123456")))
#> An object of class compData 
#> Dataset name: mydata 
#> Number of samples: 4 
#> Number of variables: 1000 
#> Number of random outliers: 0 
#> Number of single outliers: 0 
#> Number of known truly differentially expressed genes: 0 
#> No differential expression analysis has been performed. 
#> 
#> count.matrix:
#>      [,1] [,2] [,3] [,4]
#> [1,]  138  753  223  253
#> [2,]  790  938  785  778
#> [3,]  186  285  140  105
#> [4,]  178  630  708  765
#> [5,]  935  179   95  180
#> [6,]    8  651  874  665
#> + 994 rows...
#> 
#> sample.annotations:
#>   condition
#> 1         1
#> 2         1
#> 3         2
#> 4         2
#> 
#> variable.annotations:
#> data frame with 0 columns and 0 rows
#>