Hyperparameter values — duo_clustering_all_parameter_settings

Hyperparameter values for all clustering algorithms and data sets in v1 of Duo et al (F1000Research 2018)

duo_clustering_all_parameter_settings_v1(metadata = FALSE)

Arguments

metadata: Logical, whether only metadata should be returned

Details

List of hyperparameter values used for all clustering algorithms and data sets in v1 of Duò et al (F1000Research 2018).

Value

Returns a list with hyperparameter values for all data sets and methods.

References

Duò, A., Robinson, M.D., and Soneson, C. (2018). A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research, 7:1141.

Examples

duo_clustering_all_parameter_settings_v1()
#> see ?DuoClustering2018 and browseVignettes('DuoClustering2018') for documentation
#> loading from cache
#> $sce_filteredExpr10_Zhengmix4eq_PCAKmeans
#> $sce_filteredExpr10_Zhengmix4eq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4eq_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_RtsneKmeans
#> $sce_filteredExpr10_Zhengmix4eq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4eq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_Zhengmix4eq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_Zhengmix4eq_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_Seurat
#> $sce_filteredExpr10_Zhengmix4eq_Seurat$range_resolutions
#>  [1] 0.05 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredExpr10_Zhengmix4eq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4eq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4eq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_Zhengmix4eq_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_FlowSOM
#> $sce_filteredExpr10_Zhengmix4eq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredExpr10_Zhengmix4eq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredExpr10_Zhengmix4eq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_Zhengmix4eq_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3
#> $sce_filteredExpr10_Zhengmix4eq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_CIDR
#> $sce_filteredExpr10_Zhengmix4eq_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_PCAHC
#> $sce_filteredExpr10_Zhengmix4eq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4eq_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3svm
#> $sce_filteredExpr10_Zhengmix4eq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_pcaReduce
#> $sce_filteredExpr10_Zhengmix4eq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4eq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix4eq_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_TSCAN
#> $sce_filteredExpr10_Zhengmix4eq_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_ascend
#> $sce_filteredExpr10_Zhengmix4eq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4eq_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4eq_SAFE
#> $sce_filteredExpr10_Zhengmix4eq_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_PCAKmeans
#> $sce_filteredExpr10_Zhengmix4uneq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_RtsneKmeans
#> $sce_filteredExpr10_Zhengmix4uneq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_Seurat
#> $sce_filteredExpr10_Zhengmix4uneq_Seurat$range_resolutions
#>  [1] 0.05 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_FlowSOM
#> $sce_filteredExpr10_Zhengmix4uneq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3
#> $sce_filteredExpr10_Zhengmix4uneq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_CIDR
#> $sce_filteredExpr10_Zhengmix4uneq_CIDR$range_clusters
#> [1] 2 3 4 5 6 7 8 9
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_PCAHC
#> $sce_filteredExpr10_Zhengmix4uneq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3svm
#> $sce_filteredExpr10_Zhengmix4uneq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_pcaReduce
#> $sce_filteredExpr10_Zhengmix4uneq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_TSCAN
#> $sce_filteredExpr10_Zhengmix4uneq_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_ascend
#> $sce_filteredExpr10_Zhengmix4uneq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix4uneq_SAFE
#> $sce_filteredExpr10_Zhengmix4uneq_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_PCAKmeans
#> $sce_filteredExpr10_Zhengmix8eq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix8eq_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_RtsneKmeans
#> $sce_filteredExpr10_Zhengmix8eq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix8eq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_Zhengmix8eq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_Zhengmix8eq_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_Seurat
#> $sce_filteredExpr10_Zhengmix8eq_Seurat$range_resolutions
#>  [1] 0.01 0.30 0.35 0.40 0.50 1.30 1.40 1.60 1.70 1.80
#> 
#> $sce_filteredExpr10_Zhengmix8eq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix8eq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix8eq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_Zhengmix8eq_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_FlowSOM
#> $sce_filteredExpr10_Zhengmix8eq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredExpr10_Zhengmix8eq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredExpr10_Zhengmix8eq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_Zhengmix8eq_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3
#> $sce_filteredExpr10_Zhengmix8eq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_CIDR
#> $sce_filteredExpr10_Zhengmix8eq_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_PCAHC
#> $sce_filteredExpr10_Zhengmix8eq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix8eq_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3svm
#> $sce_filteredExpr10_Zhengmix8eq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_pcaReduce
#> $sce_filteredExpr10_Zhengmix8eq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix8eq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_Zhengmix8eq_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_TSCAN
#> $sce_filteredExpr10_Zhengmix8eq_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_ascend
#> $sce_filteredExpr10_Zhengmix8eq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Zhengmix8eq_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Zhengmix8eq_SAFE
#> $sce_filteredExpr10_Zhengmix8eq_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Kumar_PCAKmeans
#> $sce_filteredExpr10_Kumar_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Kumar_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_RtsneKmeans
#> $sce_filteredExpr10_Kumar_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_Kumar_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_Kumar_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_Kumar_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_Seurat
#> $sce_filteredExpr10_Kumar_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_Kumar_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_Kumar_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_Kumar_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_Kumar_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_FlowSOM
#> $sce_filteredExpr10_Kumar_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredExpr10_Kumar_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredExpr10_Kumar_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_Kumar_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_SC3
#> $sce_filteredExpr10_Kumar_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Kumar_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Kumar_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Kumar_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_CIDR
#> $sce_filteredExpr10_Kumar_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_PCAHC
#> $sce_filteredExpr10_Kumar_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Kumar_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_SC3svm
#> $sce_filteredExpr10_Kumar_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Kumar_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Kumar_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Kumar_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_pcaReduce
#> $sce_filteredExpr10_Kumar_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_Kumar_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_Kumar_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_TSCAN
#> $sce_filteredExpr10_Kumar_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_ascend
#> $sce_filteredExpr10_Kumar_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Kumar_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Kumar_SAFE
#> $sce_filteredExpr10_Kumar_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_PCAKmeans
#> $sce_filteredExpr10_Trapnell_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Trapnell_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_RtsneKmeans
#> $sce_filteredExpr10_Trapnell_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_Trapnell_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_Trapnell_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_Trapnell_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_Seurat
#> $sce_filteredExpr10_Trapnell_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_Trapnell_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_Trapnell_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_Trapnell_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_Trapnell_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_FlowSOM
#> $sce_filteredExpr10_Trapnell_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredExpr10_Trapnell_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredExpr10_Trapnell_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_Trapnell_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_SC3
#> $sce_filteredExpr10_Trapnell_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Trapnell_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Trapnell_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Trapnell_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_CIDR
#> $sce_filteredExpr10_Trapnell_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_PCAHC
#> $sce_filteredExpr10_Trapnell_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Trapnell_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_SC3svm
#> $sce_filteredExpr10_Trapnell_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Trapnell_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Trapnell_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Trapnell_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_pcaReduce
#> $sce_filteredExpr10_Trapnell_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_Trapnell_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_Trapnell_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_TSCAN
#> $sce_filteredExpr10_Trapnell_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_ascend
#> $sce_filteredExpr10_Trapnell_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Trapnell_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Trapnell_SAFE
#> $sce_filteredExpr10_Trapnell_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_Koh_PCAKmeans
#> $sce_filteredExpr10_Koh_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Koh_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_RtsneKmeans
#> $sce_filteredExpr10_Koh_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_Koh_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_Koh_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_Koh_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_Seurat
#> $sce_filteredExpr10_Koh_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1
#> 
#> $sce_filteredExpr10_Koh_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_Koh_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_Koh_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_Koh_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_FlowSOM
#> $sce_filteredExpr10_Koh_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredExpr10_Koh_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredExpr10_Koh_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_Koh_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_SC3
#> $sce_filteredExpr10_Koh_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Koh_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Koh_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Koh_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_CIDR
#> $sce_filteredExpr10_Koh_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_PCAHC
#> $sce_filteredExpr10_Koh_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Koh_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_SC3svm
#> $sce_filteredExpr10_Koh_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_Koh_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_Koh_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_Koh_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_pcaReduce
#> $sce_filteredExpr10_Koh_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_Koh_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_Koh_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_TSCAN
#> $sce_filteredExpr10_Koh_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_ascend
#> $sce_filteredExpr10_Koh_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_Koh_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_Koh_SAFE
#> $sce_filteredExpr10_Koh_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_PCAKmeans
#> $sce_filteredExpr10_SimKumar4easy_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4easy_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_RtsneKmeans
#> $sce_filteredExpr10_SimKumar4easy_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4easy_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_SimKumar4easy_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_SimKumar4easy_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_Seurat
#> $sce_filteredExpr10_SimKumar4easy_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_SimKumar4easy_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4easy_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4easy_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_SimKumar4easy_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_FlowSOM
#> $sce_filteredExpr10_SimKumar4easy_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredExpr10_SimKumar4easy_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredExpr10_SimKumar4easy_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_SimKumar4easy_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3
#> $sce_filteredExpr10_SimKumar4easy_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_CIDR
#> $sce_filteredExpr10_SimKumar4easy_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_PCAHC
#> $sce_filteredExpr10_SimKumar4easy_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4easy_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3svm
#> $sce_filteredExpr10_SimKumar4easy_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_SimKumar4easy_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_pcaReduce
#> $sce_filteredExpr10_SimKumar4easy_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4easy_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar4easy_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_TSCAN
#> $sce_filteredExpr10_SimKumar4easy_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_ascend
#> $sce_filteredExpr10_SimKumar4easy_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4easy_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4easy_SAFE
#> $sce_filteredExpr10_SimKumar4easy_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_PCAKmeans
#> $sce_filteredExpr10_SimKumar4hard_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4hard_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_RtsneKmeans
#> $sce_filteredExpr10_SimKumar4hard_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4hard_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_SimKumar4hard_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_SimKumar4hard_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_Seurat
#> $sce_filteredExpr10_SimKumar4hard_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_SimKumar4hard_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4hard_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4hard_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_SimKumar4hard_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_FlowSOM
#> $sce_filteredExpr10_SimKumar4hard_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredExpr10_SimKumar4hard_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredExpr10_SimKumar4hard_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_SimKumar4hard_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3
#> $sce_filteredExpr10_SimKumar4hard_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_CIDR
#> $sce_filteredExpr10_SimKumar4hard_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_PCAHC
#> $sce_filteredExpr10_SimKumar4hard_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4hard_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3svm
#> $sce_filteredExpr10_SimKumar4hard_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_SimKumar4hard_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_pcaReduce
#> $sce_filteredExpr10_SimKumar4hard_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4hard_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar4hard_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_TSCAN
#> $sce_filteredExpr10_SimKumar4hard_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_ascend
#> $sce_filteredExpr10_SimKumar4hard_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar4hard_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar4hard_SAFE
#> $sce_filteredExpr10_SimKumar4hard_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_PCAKmeans
#> $sce_filteredExpr10_SimKumar8hard_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar8hard_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_RtsneKmeans
#> $sce_filteredExpr10_SimKumar8hard_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar8hard_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_SimKumar8hard_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_SimKumar8hard_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_Seurat
#> $sce_filteredExpr10_SimKumar8hard_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_SimKumar8hard_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar8hard_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar8hard_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_SimKumar8hard_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_FlowSOM
#> $sce_filteredExpr10_SimKumar8hard_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredExpr10_SimKumar8hard_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredExpr10_SimKumar8hard_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_SimKumar8hard_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3
#> $sce_filteredExpr10_SimKumar8hard_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_CIDR
#> $sce_filteredExpr10_SimKumar8hard_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_PCAHC
#> $sce_filteredExpr10_SimKumar8hard_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar8hard_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3svm
#> $sce_filteredExpr10_SimKumar8hard_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_SimKumar8hard_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_pcaReduce
#> $sce_filteredExpr10_SimKumar8hard_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar8hard_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_SimKumar8hard_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_TSCAN
#> $sce_filteredExpr10_SimKumar8hard_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_ascend
#> $sce_filteredExpr10_SimKumar8hard_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_SimKumar8hard_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_SimKumar8hard_SAFE
#> $sce_filteredExpr10_SimKumar8hard_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_PCAKmeans
#> $sce_filteredExpr10_KohTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_KohTCC_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_RtsneKmeans
#> $sce_filteredExpr10_KohTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_KohTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_KohTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_KohTCC_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_Seurat
#> $sce_filteredExpr10_KohTCC_Seurat$range_resolutions
#>  [1] 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40 1.50 1.60 1.70
#> [16] 1.73 1.76 1.80 1.90 2.00 2.10
#> 
#> $sce_filteredExpr10_KohTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_KohTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_KohTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_KohTCC_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_FlowSOM
#> $sce_filteredExpr10_KohTCC_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredExpr10_KohTCC_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredExpr10_KohTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_KohTCC_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_SC3
#> $sce_filteredExpr10_KohTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_KohTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_KohTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_KohTCC_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_CIDR
#> $sce_filteredExpr10_KohTCC_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_PCAHC
#> $sce_filteredExpr10_KohTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_KohTCC_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_SC3svm
#> $sce_filteredExpr10_KohTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_KohTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_KohTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_KohTCC_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_pcaReduce
#> $sce_filteredExpr10_KohTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_KohTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_KohTCC_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_TSCAN
#> $sce_filteredExpr10_KohTCC_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_ascend
#> $sce_filteredExpr10_KohTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_KohTCC_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_KohTCC_SAFE
#> $sce_filteredExpr10_KohTCC_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_PCAKmeans
#> $sce_filteredExpr10_TrapnellTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_TrapnellTCC_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_RtsneKmeans
#> $sce_filteredExpr10_TrapnellTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_TrapnellTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_TrapnellTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_TrapnellTCC_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_Seurat
#> $sce_filteredExpr10_TrapnellTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_TrapnellTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_TrapnellTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_TrapnellTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_TrapnellTCC_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_FlowSOM
#> $sce_filteredExpr10_TrapnellTCC_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredExpr10_TrapnellTCC_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredExpr10_TrapnellTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_TrapnellTCC_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3
#> $sce_filteredExpr10_TrapnellTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_CIDR
#> $sce_filteredExpr10_TrapnellTCC_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_PCAHC
#> $sce_filteredExpr10_TrapnellTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_TrapnellTCC_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3svm
#> $sce_filteredExpr10_TrapnellTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_TrapnellTCC_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_pcaReduce
#> $sce_filteredExpr10_TrapnellTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_TrapnellTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_TrapnellTCC_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_TSCAN
#> $sce_filteredExpr10_TrapnellTCC_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_ascend
#> $sce_filteredExpr10_TrapnellTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_TrapnellTCC_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_TrapnellTCC_SAFE
#> $sce_filteredExpr10_TrapnellTCC_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_PCAKmeans
#> $sce_filteredExpr10_KumarTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_KumarTCC_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_RtsneKmeans
#> $sce_filteredExpr10_KumarTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredExpr10_KumarTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredExpr10_KumarTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredExpr10_KumarTCC_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_Seurat
#> $sce_filteredExpr10_KumarTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredExpr10_KumarTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredExpr10_KumarTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredExpr10_KumarTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredExpr10_KumarTCC_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_FlowSOM
#> $sce_filteredExpr10_KumarTCC_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredExpr10_KumarTCC_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredExpr10_KumarTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredExpr10_KumarTCC_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_SC3
#> $sce_filteredExpr10_KumarTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_KumarTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_KumarTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_KumarTCC_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_CIDR
#> $sce_filteredExpr10_KumarTCC_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_PCAHC
#> $sce_filteredExpr10_KumarTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_KumarTCC_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_SC3svm
#> $sce_filteredExpr10_KumarTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredExpr10_KumarTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredExpr10_KumarTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredExpr10_KumarTCC_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_pcaReduce
#> $sce_filteredExpr10_KumarTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredExpr10_KumarTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredExpr10_KumarTCC_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_TSCAN
#> $sce_filteredExpr10_KumarTCC_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_ascend
#> $sce_filteredExpr10_KumarTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredExpr10_KumarTCC_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredExpr10_KumarTCC_SAFE
#> $sce_filteredExpr10_KumarTCC_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_PCAKmeans
#> $sce_filteredM3Drop10_Zhengmix4eq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_RtsneKmeans
#> $sce_filteredM3Drop10_Zhengmix4eq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_Seurat
#> $sce_filteredM3Drop10_Zhengmix4eq_Seurat$range_resolutions
#>  [1] 0.05 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_FlowSOM
#> $sce_filteredM3Drop10_Zhengmix4eq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_CIDR
#> $sce_filteredM3Drop10_Zhengmix4eq_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_PCAHC
#> $sce_filteredM3Drop10_Zhengmix4eq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3svm
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_pcaReduce
#> $sce_filteredM3Drop10_Zhengmix4eq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_TSCAN
#> $sce_filteredM3Drop10_Zhengmix4eq_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_ascend
#> $sce_filteredM3Drop10_Zhengmix4eq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4eq_SAFE
#> $sce_filteredM3Drop10_Zhengmix4eq_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_PCAKmeans
#> $sce_filteredM3Drop10_Zhengmix4uneq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_RtsneKmeans
#> $sce_filteredM3Drop10_Zhengmix4uneq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_Seurat
#> $sce_filteredM3Drop10_Zhengmix4uneq_Seurat$range_resolutions
#>  [1] 0.05 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_FlowSOM
#> $sce_filteredM3Drop10_Zhengmix4uneq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_CIDR
#> $sce_filteredM3Drop10_Zhengmix4uneq_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_PCAHC
#> $sce_filteredM3Drop10_Zhengmix4uneq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3svm
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_pcaReduce
#> $sce_filteredM3Drop10_Zhengmix4uneq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_TSCAN
#> $sce_filteredM3Drop10_Zhengmix4uneq_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_ascend
#> $sce_filteredM3Drop10_Zhengmix4uneq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix4uneq_SAFE
#> $sce_filteredM3Drop10_Zhengmix4uneq_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_PCAKmeans
#> $sce_filteredM3Drop10_Zhengmix8eq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_RtsneKmeans
#> $sce_filteredM3Drop10_Zhengmix8eq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_Seurat
#> $sce_filteredM3Drop10_Zhengmix8eq_Seurat$range_resolutions
#> [1] 0.1 0.7 1.0 1.3 1.6 2.5 3.0
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_FlowSOM
#> $sce_filteredM3Drop10_Zhengmix8eq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_CIDR
#> $sce_filteredM3Drop10_Zhengmix8eq_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_PCAHC
#> $sce_filteredM3Drop10_Zhengmix8eq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3svm
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_pcaReduce
#> $sce_filteredM3Drop10_Zhengmix8eq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_TSCAN
#> $sce_filteredM3Drop10_Zhengmix8eq_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_ascend
#> $sce_filteredM3Drop10_Zhengmix8eq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Zhengmix8eq_SAFE
#> $sce_filteredM3Drop10_Zhengmix8eq_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_PCAKmeans
#> $sce_filteredM3Drop10_Kumar_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Kumar_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_RtsneKmeans
#> $sce_filteredM3Drop10_Kumar_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Kumar_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_Kumar_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Kumar_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_Seurat
#> $sce_filteredM3Drop10_Kumar_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredM3Drop10_Kumar_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Kumar_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Kumar_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_Kumar_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_FlowSOM
#> $sce_filteredM3Drop10_Kumar_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_Kumar_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_Kumar_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Kumar_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_SC3
#> $sce_filteredM3Drop10_Kumar_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Kumar_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Kumar_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Kumar_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_CIDR
#> $sce_filteredM3Drop10_Kumar_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_PCAHC
#> $sce_filteredM3Drop10_Kumar_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Kumar_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_SC3svm
#> $sce_filteredM3Drop10_Kumar_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Kumar_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Kumar_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Kumar_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_pcaReduce
#> $sce_filteredM3Drop10_Kumar_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Kumar_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Kumar_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_TSCAN
#> $sce_filteredM3Drop10_Kumar_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_ascend
#> $sce_filteredM3Drop10_Kumar_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Kumar_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Kumar_SAFE
#> $sce_filteredM3Drop10_Kumar_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_PCAKmeans
#> $sce_filteredM3Drop10_Trapnell_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Trapnell_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_RtsneKmeans
#> $sce_filteredM3Drop10_Trapnell_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Trapnell_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_Trapnell_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Trapnell_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_Seurat
#> $sce_filteredM3Drop10_Trapnell_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredM3Drop10_Trapnell_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Trapnell_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Trapnell_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_Trapnell_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_FlowSOM
#> $sce_filteredM3Drop10_Trapnell_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_Trapnell_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_Trapnell_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Trapnell_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3
#> $sce_filteredM3Drop10_Trapnell_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_CIDR
#> $sce_filteredM3Drop10_Trapnell_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_PCAHC
#> $sce_filteredM3Drop10_Trapnell_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Trapnell_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3svm
#> $sce_filteredM3Drop10_Trapnell_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Trapnell_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_pcaReduce
#> $sce_filteredM3Drop10_Trapnell_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Trapnell_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Trapnell_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_TSCAN
#> $sce_filteredM3Drop10_Trapnell_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_ascend
#> $sce_filteredM3Drop10_Trapnell_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Trapnell_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Trapnell_SAFE
#> $sce_filteredM3Drop10_Trapnell_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_Koh_PCAKmeans
#> $sce_filteredM3Drop10_Koh_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Koh_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_RtsneKmeans
#> $sce_filteredM3Drop10_Koh_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Koh_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_Koh_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Koh_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_Seurat
#> $sce_filteredM3Drop10_Koh_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1
#> [20] 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6
#> 
#> $sce_filteredM3Drop10_Koh_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Koh_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Koh_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_Koh_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_FlowSOM
#> $sce_filteredM3Drop10_Koh_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_Koh_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_Koh_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_Koh_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_SC3
#> $sce_filteredM3Drop10_Koh_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Koh_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Koh_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Koh_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_CIDR
#> $sce_filteredM3Drop10_Koh_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_PCAHC
#> $sce_filteredM3Drop10_Koh_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Koh_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_SC3svm
#> $sce_filteredM3Drop10_Koh_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_Koh_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Koh_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_Koh_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_pcaReduce
#> $sce_filteredM3Drop10_Koh_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Koh_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_Koh_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_TSCAN
#> $sce_filteredM3Drop10_Koh_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_ascend
#> $sce_filteredM3Drop10_Koh_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_Koh_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_Koh_SAFE
#> $sce_filteredM3Drop10_Koh_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_PCAKmeans
#> $sce_filteredM3Drop10_SimKumar4easy_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_RtsneKmeans
#> $sce_filteredM3Drop10_SimKumar4easy_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_Seurat
#> $sce_filteredM3Drop10_SimKumar4easy_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_FlowSOM
#> $sce_filteredM3Drop10_SimKumar4easy_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3
#> $sce_filteredM3Drop10_SimKumar4easy_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_CIDR
#> $sce_filteredM3Drop10_SimKumar4easy_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_PCAHC
#> $sce_filteredM3Drop10_SimKumar4easy_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3svm
#> $sce_filteredM3Drop10_SimKumar4easy_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_pcaReduce
#> $sce_filteredM3Drop10_SimKumar4easy_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_TSCAN
#> $sce_filteredM3Drop10_SimKumar4easy_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_ascend
#> $sce_filteredM3Drop10_SimKumar4easy_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4easy_SAFE
#> $sce_filteredM3Drop10_SimKumar4easy_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_PCAKmeans
#> $sce_filteredM3Drop10_SimKumar4hard_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_RtsneKmeans
#> $sce_filteredM3Drop10_SimKumar4hard_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_Seurat
#> $sce_filteredM3Drop10_SimKumar4hard_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_FlowSOM
#> $sce_filteredM3Drop10_SimKumar4hard_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3
#> $sce_filteredM3Drop10_SimKumar4hard_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_CIDR
#> $sce_filteredM3Drop10_SimKumar4hard_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_PCAHC
#> $sce_filteredM3Drop10_SimKumar4hard_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3svm
#> $sce_filteredM3Drop10_SimKumar4hard_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_pcaReduce
#> $sce_filteredM3Drop10_SimKumar4hard_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_TSCAN
#> $sce_filteredM3Drop10_SimKumar4hard_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_ascend
#> $sce_filteredM3Drop10_SimKumar4hard_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar4hard_SAFE
#> $sce_filteredM3Drop10_SimKumar4hard_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_PCAKmeans
#> $sce_filteredM3Drop10_SimKumar8hard_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_RtsneKmeans
#> $sce_filteredM3Drop10_SimKumar8hard_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_Seurat
#> $sce_filteredM3Drop10_SimKumar8hard_Seurat$range_resolutions
#>  [1] 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.13 1.15 1.18 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_FlowSOM
#> $sce_filteredM3Drop10_SimKumar8hard_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3
#> $sce_filteredM3Drop10_SimKumar8hard_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_CIDR
#> $sce_filteredM3Drop10_SimKumar8hard_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_PCAHC
#> $sce_filteredM3Drop10_SimKumar8hard_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3svm
#> $sce_filteredM3Drop10_SimKumar8hard_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_pcaReduce
#> $sce_filteredM3Drop10_SimKumar8hard_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_TSCAN
#> $sce_filteredM3Drop10_SimKumar8hard_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_ascend
#> $sce_filteredM3Drop10_SimKumar8hard_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_SimKumar8hard_SAFE
#> $sce_filteredM3Drop10_SimKumar8hard_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_PCAKmeans
#> $sce_filteredM3Drop10_KohTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KohTCC_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_RtsneKmeans
#> $sce_filteredM3Drop10_KohTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KohTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_KohTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_KohTCC_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_Seurat
#> $sce_filteredM3Drop10_KohTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1
#> 
#> $sce_filteredM3Drop10_KohTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KohTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KohTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_KohTCC_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_FlowSOM
#> $sce_filteredM3Drop10_KohTCC_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_KohTCC_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredM3Drop10_KohTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_KohTCC_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3
#> $sce_filteredM3Drop10_KohTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_CIDR
#> $sce_filteredM3Drop10_KohTCC_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_PCAHC
#> $sce_filteredM3Drop10_KohTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KohTCC_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3svm
#> $sce_filteredM3Drop10_KohTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_KohTCC_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_pcaReduce
#> $sce_filteredM3Drop10_KohTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KohTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_KohTCC_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_TSCAN
#> $sce_filteredM3Drop10_KohTCC_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_ascend
#> $sce_filteredM3Drop10_KohTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KohTCC_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_KohTCC_SAFE
#> $sce_filteredM3Drop10_KohTCC_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_PCAKmeans
#> $sce_filteredM3Drop10_TrapnellTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_RtsneKmeans
#> $sce_filteredM3Drop10_TrapnellTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_Seurat
#> $sce_filteredM3Drop10_TrapnellTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_FlowSOM
#> $sce_filteredM3Drop10_TrapnellTCC_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3
#> $sce_filteredM3Drop10_TrapnellTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_CIDR
#> $sce_filteredM3Drop10_TrapnellTCC_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_PCAHC
#> $sce_filteredM3Drop10_TrapnellTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3svm
#> $sce_filteredM3Drop10_TrapnellTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_pcaReduce
#> $sce_filteredM3Drop10_TrapnellTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_TSCAN
#> $sce_filteredM3Drop10_TrapnellTCC_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_ascend
#> $sce_filteredM3Drop10_TrapnellTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_TrapnellTCC_SAFE
#> $sce_filteredM3Drop10_TrapnellTCC_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_PCAKmeans
#> $sce_filteredM3Drop10_KumarTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KumarTCC_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_RtsneKmeans
#> $sce_filteredM3Drop10_KumarTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KumarTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredM3Drop10_KumarTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredM3Drop10_KumarTCC_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_Seurat
#> $sce_filteredM3Drop10_KumarTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredM3Drop10_KumarTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KumarTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KumarTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredM3Drop10_KumarTCC_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_FlowSOM
#> $sce_filteredM3Drop10_KumarTCC_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_KumarTCC_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredM3Drop10_KumarTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredM3Drop10_KumarTCC_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3
#> $sce_filteredM3Drop10_KumarTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_CIDR
#> $sce_filteredM3Drop10_KumarTCC_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_PCAHC
#> $sce_filteredM3Drop10_KumarTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KumarTCC_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3svm
#> $sce_filteredM3Drop10_KumarTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredM3Drop10_KumarTCC_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_pcaReduce
#> $sce_filteredM3Drop10_KumarTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KumarTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredM3Drop10_KumarTCC_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_TSCAN
#> $sce_filteredM3Drop10_KumarTCC_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_ascend
#> $sce_filteredM3Drop10_KumarTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredM3Drop10_KumarTCC_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredM3Drop10_KumarTCC_SAFE
#> $sce_filteredM3Drop10_KumarTCC_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_PCAKmeans
#> $sce_filteredHVG10_Zhengmix4eq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4eq_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_RtsneKmeans
#> $sce_filteredHVG10_Zhengmix4eq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4eq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_Zhengmix4eq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_Zhengmix4eq_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_Seurat
#> $sce_filteredHVG10_Zhengmix4eq_Seurat$range_resolutions
#>  [1] 0.05 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredHVG10_Zhengmix4eq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4eq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4eq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_Zhengmix4eq_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_FlowSOM
#> $sce_filteredHVG10_Zhengmix4eq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredHVG10_Zhengmix4eq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredHVG10_Zhengmix4eq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_Zhengmix4eq_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3
#> $sce_filteredHVG10_Zhengmix4eq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_CIDR
#> $sce_filteredHVG10_Zhengmix4eq_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_PCAHC
#> $sce_filteredHVG10_Zhengmix4eq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4eq_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3svm
#> $sce_filteredHVG10_Zhengmix4eq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_pcaReduce
#> $sce_filteredHVG10_Zhengmix4eq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4eq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix4eq_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_TSCAN
#> $sce_filteredHVG10_Zhengmix4eq_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_ascend
#> $sce_filteredHVG10_Zhengmix4eq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4eq_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4eq_SAFE
#> $sce_filteredHVG10_Zhengmix4eq_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_PCAKmeans
#> $sce_filteredHVG10_Zhengmix4uneq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_RtsneKmeans
#> $sce_filteredHVG10_Zhengmix4uneq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_Seurat
#> $sce_filteredHVG10_Zhengmix4uneq_Seurat$range_resolutions
#>  [1] 0.05 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 1.10 1.20 1.30 1.40
#> [16] 1.50
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_FlowSOM
#> $sce_filteredHVG10_Zhengmix4uneq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3
#> $sce_filteredHVG10_Zhengmix4uneq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_CIDR
#> $sce_filteredHVG10_Zhengmix4uneq_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_PCAHC
#> $sce_filteredHVG10_Zhengmix4uneq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3svm
#> $sce_filteredHVG10_Zhengmix4uneq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_pcaReduce
#> $sce_filteredHVG10_Zhengmix4uneq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_TSCAN
#> $sce_filteredHVG10_Zhengmix4uneq_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_ascend
#> $sce_filteredHVG10_Zhengmix4uneq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix4uneq_SAFE
#> $sce_filteredHVG10_Zhengmix4uneq_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_PCAKmeans
#> $sce_filteredHVG10_Zhengmix8eq_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix8eq_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_RtsneKmeans
#> $sce_filteredHVG10_Zhengmix8eq_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix8eq_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_Zhengmix8eq_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_Zhengmix8eq_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_Seurat
#> $sce_filteredHVG10_Zhengmix8eq_Seurat$range_resolutions
#> [1] 0.1 0.3 1.0 1.1 1.3 1.4 1.6 2.0
#> 
#> $sce_filteredHVG10_Zhengmix8eq_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix8eq_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix8eq_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_Zhengmix8eq_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_FlowSOM
#> $sce_filteredHVG10_Zhengmix8eq_FlowSOM$xdim
#> [1] 15
#> 
#> $sce_filteredHVG10_Zhengmix8eq_FlowSOM$ydim
#> [1] 15
#> 
#> $sce_filteredHVG10_Zhengmix8eq_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_Zhengmix8eq_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3
#> $sce_filteredHVG10_Zhengmix8eq_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_CIDR
#> $sce_filteredHVG10_Zhengmix8eq_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_PCAHC
#> $sce_filteredHVG10_Zhengmix8eq_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix8eq_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3svm
#> $sce_filteredHVG10_Zhengmix8eq_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_pcaReduce
#> $sce_filteredHVG10_Zhengmix8eq_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix8eq_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_Zhengmix8eq_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_TSCAN
#> $sce_filteredHVG10_Zhengmix8eq_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_ascend
#> $sce_filteredHVG10_Zhengmix8eq_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Zhengmix8eq_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Zhengmix8eq_SAFE
#> $sce_filteredHVG10_Zhengmix8eq_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Kumar_PCAKmeans
#> $sce_filteredHVG10_Kumar_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Kumar_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_RtsneKmeans
#> $sce_filteredHVG10_Kumar_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_Kumar_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_Kumar_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_Kumar_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_Seurat
#> $sce_filteredHVG10_Kumar_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_Kumar_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_Kumar_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_Kumar_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_Kumar_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_FlowSOM
#> $sce_filteredHVG10_Kumar_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredHVG10_Kumar_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredHVG10_Kumar_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_Kumar_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_SC3
#> $sce_filteredHVG10_Kumar_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Kumar_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Kumar_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Kumar_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_CIDR
#> $sce_filteredHVG10_Kumar_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_PCAHC
#> $sce_filteredHVG10_Kumar_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Kumar_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_SC3svm
#> $sce_filteredHVG10_Kumar_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Kumar_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Kumar_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Kumar_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_pcaReduce
#> $sce_filteredHVG10_Kumar_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_Kumar_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_Kumar_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_TSCAN
#> $sce_filteredHVG10_Kumar_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_ascend
#> $sce_filteredHVG10_Kumar_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Kumar_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Kumar_SAFE
#> $sce_filteredHVG10_Kumar_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_PCAKmeans
#> $sce_filteredHVG10_Trapnell_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Trapnell_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_RtsneKmeans
#> $sce_filteredHVG10_Trapnell_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_Trapnell_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_Trapnell_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_Trapnell_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_Seurat
#> $sce_filteredHVG10_Trapnell_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_Trapnell_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_Trapnell_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_Trapnell_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_Trapnell_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_FlowSOM
#> $sce_filteredHVG10_Trapnell_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredHVG10_Trapnell_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredHVG10_Trapnell_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_Trapnell_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_SC3
#> $sce_filteredHVG10_Trapnell_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Trapnell_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Trapnell_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Trapnell_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_CIDR
#> $sce_filteredHVG10_Trapnell_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_PCAHC
#> $sce_filteredHVG10_Trapnell_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Trapnell_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_SC3svm
#> $sce_filteredHVG10_Trapnell_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Trapnell_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Trapnell_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Trapnell_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_pcaReduce
#> $sce_filteredHVG10_Trapnell_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_Trapnell_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_Trapnell_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_TSCAN
#> $sce_filteredHVG10_Trapnell_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_ascend
#> $sce_filteredHVG10_Trapnell_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Trapnell_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Trapnell_SAFE
#> $sce_filteredHVG10_Trapnell_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_Koh_PCAKmeans
#> $sce_filteredHVG10_Koh_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Koh_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_RtsneKmeans
#> $sce_filteredHVG10_Koh_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_Koh_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_Koh_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_Koh_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_Seurat
#> $sce_filteredHVG10_Koh_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1
#> 
#> $sce_filteredHVG10_Koh_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_Koh_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_Koh_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_Koh_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_FlowSOM
#> $sce_filteredHVG10_Koh_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredHVG10_Koh_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredHVG10_Koh_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_Koh_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_SC3
#> $sce_filteredHVG10_Koh_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Koh_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Koh_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Koh_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_CIDR
#> $sce_filteredHVG10_Koh_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_PCAHC
#> $sce_filteredHVG10_Koh_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Koh_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_SC3svm
#> $sce_filteredHVG10_Koh_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_Koh_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_Koh_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_Koh_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_pcaReduce
#> $sce_filteredHVG10_Koh_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_Koh_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_Koh_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_TSCAN
#> $sce_filteredHVG10_Koh_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_ascend
#> $sce_filteredHVG10_Koh_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_Koh_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_Koh_SAFE
#> $sce_filteredHVG10_Koh_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_PCAKmeans
#> $sce_filteredHVG10_SimKumar4easy_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4easy_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_RtsneKmeans
#> $sce_filteredHVG10_SimKumar4easy_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4easy_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_SimKumar4easy_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_SimKumar4easy_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_Seurat
#> $sce_filteredHVG10_SimKumar4easy_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_SimKumar4easy_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4easy_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4easy_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_SimKumar4easy_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_FlowSOM
#> $sce_filteredHVG10_SimKumar4easy_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredHVG10_SimKumar4easy_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredHVG10_SimKumar4easy_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_SimKumar4easy_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3
#> $sce_filteredHVG10_SimKumar4easy_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_CIDR
#> $sce_filteredHVG10_SimKumar4easy_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_PCAHC
#> $sce_filteredHVG10_SimKumar4easy_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4easy_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3svm
#> $sce_filteredHVG10_SimKumar4easy_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_SimKumar4easy_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_pcaReduce
#> $sce_filteredHVG10_SimKumar4easy_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4easy_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar4easy_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_TSCAN
#> $sce_filteredHVG10_SimKumar4easy_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_ascend
#> $sce_filteredHVG10_SimKumar4easy_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4easy_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4easy_SAFE
#> $sce_filteredHVG10_SimKumar4easy_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_PCAKmeans
#> $sce_filteredHVG10_SimKumar4hard_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4hard_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_RtsneKmeans
#> $sce_filteredHVG10_SimKumar4hard_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4hard_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_SimKumar4hard_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_SimKumar4hard_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_Seurat
#> $sce_filteredHVG10_SimKumar4hard_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_SimKumar4hard_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4hard_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4hard_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_SimKumar4hard_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_FlowSOM
#> $sce_filteredHVG10_SimKumar4hard_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredHVG10_SimKumar4hard_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredHVG10_SimKumar4hard_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_SimKumar4hard_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3
#> $sce_filteredHVG10_SimKumar4hard_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_CIDR
#> $sce_filteredHVG10_SimKumar4hard_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_PCAHC
#> $sce_filteredHVG10_SimKumar4hard_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4hard_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3svm
#> $sce_filteredHVG10_SimKumar4hard_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_SimKumar4hard_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_pcaReduce
#> $sce_filteredHVG10_SimKumar4hard_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4hard_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar4hard_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_TSCAN
#> $sce_filteredHVG10_SimKumar4hard_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_ascend
#> $sce_filteredHVG10_SimKumar4hard_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar4hard_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar4hard_SAFE
#> $sce_filteredHVG10_SimKumar4hard_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_PCAKmeans
#> $sce_filteredHVG10_SimKumar8hard_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar8hard_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_RtsneKmeans
#> $sce_filteredHVG10_SimKumar8hard_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar8hard_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_SimKumar8hard_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_SimKumar8hard_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_Seurat
#> $sce_filteredHVG10_SimKumar8hard_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_SimKumar8hard_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar8hard_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar8hard_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_SimKumar8hard_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_FlowSOM
#> $sce_filteredHVG10_SimKumar8hard_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredHVG10_SimKumar8hard_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredHVG10_SimKumar8hard_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_SimKumar8hard_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3
#> $sce_filteredHVG10_SimKumar8hard_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_CIDR
#> $sce_filteredHVG10_SimKumar8hard_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_PCAHC
#> $sce_filteredHVG10_SimKumar8hard_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar8hard_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3svm
#> $sce_filteredHVG10_SimKumar8hard_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_SimKumar8hard_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_pcaReduce
#> $sce_filteredHVG10_SimKumar8hard_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar8hard_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_SimKumar8hard_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_TSCAN
#> $sce_filteredHVG10_SimKumar8hard_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_ascend
#> $sce_filteredHVG10_SimKumar8hard_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_SimKumar8hard_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_SimKumar8hard_SAFE
#> $sce_filteredHVG10_SimKumar8hard_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_PCAKmeans
#> $sce_filteredHVG10_KohTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_KohTCC_PCAKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_RtsneKmeans
#> $sce_filteredHVG10_KohTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_KohTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_KohTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_KohTCC_RtsneKmeans$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_Seurat
#> $sce_filteredHVG10_KohTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1
#> 
#> $sce_filteredHVG10_KohTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_KohTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_KohTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_KohTCC_Seurat$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_FlowSOM
#> $sce_filteredHVG10_KohTCC_FlowSOM$xdim
#> [1] 8
#> 
#> $sce_filteredHVG10_KohTCC_FlowSOM$ydim
#> [1] 8
#> 
#> $sce_filteredHVG10_KohTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_KohTCC_FlowSOM$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_SC3
#> $sce_filteredHVG10_KohTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_KohTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_KohTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_KohTCC_SC3$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_CIDR
#> $sce_filteredHVG10_KohTCC_CIDR$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_PCAHC
#> $sce_filteredHVG10_KohTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_KohTCC_PCAHC$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_SC3svm
#> $sce_filteredHVG10_KohTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_KohTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_KohTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_KohTCC_SC3svm$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_pcaReduce
#> $sce_filteredHVG10_KohTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_KohTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_KohTCC_pcaReduce$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_TSCAN
#> $sce_filteredHVG10_KohTCC_TSCAN$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_ascend
#> $sce_filteredHVG10_KohTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_KohTCC_ascend$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_KohTCC_SAFE
#> $sce_filteredHVG10_KohTCC_SAFE$range_clusters
#>  [1]  2  3  4  5  6  7  8  9 10 11 12 13 14 15
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_PCAKmeans
#> $sce_filteredHVG10_TrapnellTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_TrapnellTCC_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_RtsneKmeans
#> $sce_filteredHVG10_TrapnellTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_TrapnellTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_TrapnellTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_TrapnellTCC_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_Seurat
#> $sce_filteredHVG10_TrapnellTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_TrapnellTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_TrapnellTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_TrapnellTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_TrapnellTCC_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_FlowSOM
#> $sce_filteredHVG10_TrapnellTCC_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredHVG10_TrapnellTCC_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredHVG10_TrapnellTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_TrapnellTCC_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3
#> $sce_filteredHVG10_TrapnellTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_CIDR
#> $sce_filteredHVG10_TrapnellTCC_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_PCAHC
#> $sce_filteredHVG10_TrapnellTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_TrapnellTCC_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3svm
#> $sce_filteredHVG10_TrapnellTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_TrapnellTCC_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_pcaReduce
#> $sce_filteredHVG10_TrapnellTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_TrapnellTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_TrapnellTCC_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_TSCAN
#> $sce_filteredHVG10_TrapnellTCC_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_ascend
#> $sce_filteredHVG10_TrapnellTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_TrapnellTCC_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_TrapnellTCC_SAFE
#> $sce_filteredHVG10_TrapnellTCC_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_PCAKmeans
#> $sce_filteredHVG10_KumarTCC_PCAKmeans$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_KumarTCC_PCAKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_RtsneKmeans
#> $sce_filteredHVG10_KumarTCC_RtsneKmeans$perplexity
#> [1] 30
#> 
#> $sce_filteredHVG10_KumarTCC_RtsneKmeans$dims
#> [1] 3
#> 
#> $sce_filteredHVG10_KumarTCC_RtsneKmeans$initial_dims
#> [1] 50
#> 
#> $sce_filteredHVG10_KumarTCC_RtsneKmeans$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_Seurat
#> $sce_filteredHVG10_KumarTCC_Seurat$range_resolutions
#>  [1] 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5
#> 
#> $sce_filteredHVG10_KumarTCC_Seurat$min.cells
#> [1] 0
#> 
#> $sce_filteredHVG10_KumarTCC_Seurat$min.genes
#> [1] 0
#> 
#> $sce_filteredHVG10_KumarTCC_Seurat$dims.use
#>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
#> [26] 26 27 28 29 30
#> 
#> $sce_filteredHVG10_KumarTCC_Seurat$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_FlowSOM
#> $sce_filteredHVG10_KumarTCC_FlowSOM$xdim
#> [1] 5
#> 
#> $sce_filteredHVG10_KumarTCC_FlowSOM$ydim
#> [1] 5
#> 
#> $sce_filteredHVG10_KumarTCC_FlowSOM$nPC
#> [1] 50
#> 
#> $sce_filteredHVG10_KumarTCC_FlowSOM$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_SC3
#> $sce_filteredHVG10_KumarTCC_SC3$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_KumarTCC_SC3$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_KumarTCC_SC3$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_KumarTCC_SC3$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_CIDR
#> $sce_filteredHVG10_KumarTCC_CIDR$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_PCAHC
#> $sce_filteredHVG10_KumarTCC_PCAHC$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_KumarTCC_PCAHC$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_SC3svm
#> $sce_filteredHVG10_KumarTCC_SC3svm$pct_dropout_min
#> [1] 0
#> 
#> $sce_filteredHVG10_KumarTCC_SC3svm$pct_dropout_max
#> [1] 100
#> 
#> $sce_filteredHVG10_KumarTCC_SC3svm$gene_filter
#> [1] FALSE
#> 
#> $sce_filteredHVG10_KumarTCC_SC3svm$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_pcaReduce
#> $sce_filteredHVG10_KumarTCC_pcaReduce$q
#> [1] 30
#> 
#> $sce_filteredHVG10_KumarTCC_pcaReduce$nbt
#> [1] 100
#> 
#> $sce_filteredHVG10_KumarTCC_pcaReduce$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_TSCAN
#> $sce_filteredHVG10_KumarTCC_TSCAN$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_ascend
#> $sce_filteredHVG10_KumarTCC_ascend$nPC
#> [1] 30
#> 
#> $sce_filteredHVG10_KumarTCC_ascend$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#> 
#> $sce_filteredHVG10_KumarTCC_SAFE
#> $sce_filteredHVG10_KumarTCC_SAFE$range_clusters
#> [1]  2  3  4  5  6  7  8  9 10
#> 
#>