Accessor and replacement functions for splv slot

Accessor and replacement functions for the splv slot in a COBRAPerformance or COBRAPlot object.

Usage

splv(x, ...)

splv(x, ...) <- value

# S4 method for class 'COBRAPerformance'
splv(x)

# S4 method for class 'COBRAPerformance,character'
splv(x) <- value

# S4 method for class 'COBRAPlot,character'
splv(x) <- value

Arguments

x

A COBRAPerformance or COBRAPlot object.

...

Additional arguments.

value

A character string giving the name of a feature annotation to use for stratification.

Value

The accessor function returns a character string giving the name of a feature annotation to use for stratification.

Author

Charlotte Soneson

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example,
                                   binary_truth = "status",
                                   aspects = "fdrtpr", splv = "expr_cat")
#> Warning: Object doesn't have a slot sval. Please run update_cobradata(). For consistency, I will return an empty data.frame
#> column DESeq2 is being ignored for NBRS calculations
#> column DESeq2 is being ignored for TPR calculations
#> column DESeq2 is being ignored for FDR calculations
splv(cobraperf)
#> [1] "expr_cat"