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Accessor and replacement functions for pval slot

Source: R/AllGenerics.R, R/COBRAData.R
pval.Rd

Accessor and replacement functions for the pval slot in a COBRAData object.

Usage

pval(x, ...)

pval(x, ...) <- value

# S4 method for class 'COBRAData'
pval(x)

# S4 method for class 'COBRAData,data.frame'
pval(x) <- value

Arguments

x

A COBRAData object.

...

Additional arguments.

value

A data frame containing p-values for each feature and each method.

Value

The accessor function returns a data frame containing p-values for each feature and each method.

Author

Charlotte Soneson

Examples

data(cobradata_example)
head(pval(cobradata_example))
#>                        edgeR         voom       DESeq2
#> ENSG00000000457 1.178024e-01 5.147484e-02 1.627063e-02
#> ENSG00000000460 1.101413e-01 1.276784e-01 3.281416e-02
#> ENSG00000000938 8.128245e-01 8.712829e-01 9.942761e-01
#> ENSG00000000971 8.449686e-01 8.939493e-01 9.627826e-01
#> ENSG00000001460 8.343203e-21 6.007010e-10 9.303159e-23
#> ENSG00000001461 2.200312e-01 1.444503e-01 8.245376e-02