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Accessor and replacement functions for plotcolors slot

Source: R/AllGenerics.R, R/COBRAPlot.R
plotcolors.Rd

Accessor and replacement functions for the plotcolors slot in an COBRAPlot object.

Usage

plotcolors(x, ...)

plotcolors(x, ...) <- value

# S4 method for class 'COBRAPlot'
plotcolors(x)

# S4 method for class 'COBRAPlot,character'
plotcolors(x) <- value

Arguments

x

A COBRAPlot object.

...

Additional arguments.

value

A character vector giving the colors assigned to each of the methods (or method/stratification level combinations) represented in the COBRAPlot object.

Value

The accessor function returns a character vector giving the colors assigned to each of the methods (or method/stratification level combinations) represented in the COBRAPlot object.

Author

Charlotte Soneson

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example,
                                   binary_truth = "status",
                                   aspects = "fdrtpr")
#> Warning: Object doesn't have a slot sval. Please run update_cobradata(). For consistency, I will return an empty data.frame
#> column DESeq2 is being ignored for NBRS calculations
#> column DESeq2 is being ignored for TPR calculations
#> column DESeq2 is being ignored for FDR calculations
cobraplot <- prepare_data_for_plot(cobraperf)
plotcolors(cobraplot)
#>            edgeR             voom    edgeR_overall     voom_overall 
#>        "#F8766D"        "#00BFC4"        "#F8766D"        "#00BFC4" 
#>         edgeRyes          voomyes edgeR_overallyes  voom_overallyes 
#>        "#F8766D"        "#00BFC4"        "#F8766D"        "#00BFC4" 
#>          edgeRno           voomno  edgeR_overallno   voom_overallno 
#>          "white"          "white"          "white"          "white"