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Accessor and replacement functions for padj slot

Source: R/AllGenerics.R, R/COBRAData.R
padj.Rd

Accessor and replacement functions for the padj slot in a COBRAData object.

Usage

padj(x, ...)

padj(x, ...) <- value

# S4 method for class 'COBRAData'
padj(x)

# S4 method for class 'COBRAData,data.frame'
padj(x) <- value

Arguments

x

A COBRAData object.

...

Additional arguments.

value

A data frame containing adjusted p-values for each feature and each method.

Value

The accessor function returns a data frame containing adjusted p-values for each feature and each method.

Author

Charlotte Soneson

Examples

data(cobradata_example)
head(padj(cobradata_example))
#>                        edgeR         voom
#> ENSG00000000457 2.833295e-01 1.375146e-01
#> ENSG00000000460 2.700376e-01 2.826398e-01
#> ENSG00000000938 9.232794e-01 9.399669e-01
#> ENSG00000000971 9.382227e-01 9.492325e-01
#> ENSG00000001460 6.333969e-20 4.574862e-09
#> ENSG00000001461 4.417195e-01 3.096840e-01